'''Allele frequency''' is a term of
population genetics that is used in characterizing the
genetic diversity of a
species population, or equivalently the richness of its
gene pool. Allele frequency is defined as follows:
Given a) a particular
chromosome locus, b) a
gene occupying that locus, c) a population of individuals carrying
n loci in each of their
somatic cells (e.g. two loci in the cells of diploid species, which contain two sets of chromosomes) and finally d) a variant or
allele of the gene, then the
allele frequency of that allele is the fraction or percentage of loci that the allele occupies within the population.
To take an example, if the frequency of an allele is 20% in a given population, then among population members, one in five chromosomes will carry that allele. Four out of five will be occupied by other variants of the gene, of which there may be one or many.
Note that for diploid genes, however, the proportion of
individuals that carry this allele may be up to
two in five. If the allele distributes randomly, then the
binomial theorem will apply: 32% of the population will be heterozygous for the allele (i.e. carry one copy of that allele and one copy of another in each somatic cell) and 4% will be homozygous (carrying two copies of the allele). So all together 36% of diploid individuals would be expected to carry an allele that has a frequency of 20%. However, alleles distribute randomly only in the absence of
selection and under other assumptions. When these conditions apply, a population is said to be in
Hardy-Weinberg equilibrium.
The frequencies of all the alleles of a given gene often are graphed together as an
allele frequency distribution histogram. Population genetics studies the different "forces" that might lead to changes in the distribution and frequencies of alleles -- in other words, to
evolution. Besides selection, these forces include
genetic drift,
mutation and
migration.
Compare
genotype frequency.
Example
If there are ten individuals in a population and at a given locus there are two possible alleles,
A and
a, then if the
genotypes of the individuals are:
:''AA'',
Aa,
AA,
aa,
Aa,
AA,
AA,
Aa,
Aa, and
AA
then the allele frequencies of allele
A and allele
a are:
:''p''
A = (2+1+2+0+1+2+2+1+1+2)/20 = 0.7
:''p''
a = (0+1+0+2+1+0+0+1+1+0)/20 = 0.3
Category:Population genetics